| Test | Relevant Species | Serology (EIA/IFA) | Molecular Testing (PCR, RT-PCR) |
Microbiology (Bacteriology, Parasitology) |
|---|---|---|---|---|
| 16S qPCR - Germ Free Test | M | F.B.T / FF (One pellet only) | ||
| Adenovirus Type 1 (MAD1) | M / R | Sera / DBS | Urine-soaked F in B.T / F.B.T / FF / EAD / CLP | |
| Adenovirus Type 2 (MAD2) | M / R | Sera / DBS | F.B.T / FF / EAD / CLP | |
| Balantidium caviae | Gp | FF | ||
| Bordetella spp. | M / R / Rb / Gp / H / F | TM Swab: Oral P / TM Swab: Lung | ||
| Bordetella bronchisepticaBAC | M / R / Rb / Gp / H | FLOQ Swab: Oral P (in B.T) / LUNG in B.T / EAD / CLP | TM Swab: Oral P / TM Swab: Lung | |
| Bordetella hinzii (BHINZ) BAC | M | Sera / DBS | FLOQ Swab: Oral P (in B.T) / LUNG in B.T / EAD / CLP | TM Swab: Oral P / TM Swab: Lung |
| Burkholderia spp. | M / R / Rb | FF / TM Swab: Faecal / Tissue | ||
| CAR bacillus (CARB) (renamed Filobacterium rodentium) | M / R / Rb / Gp | Sera / DBS | FLOQ Swab: Oral P (in B.T) / LUNG in B.T / EAD / CLP | |
| Cestodes (Tapeworms) | M / R | FF | ||
| Chilomastix spp. | M / R / Gp | F.B.T / FF / EAD | FF | |
| Chilomastix bettencourti | M / R / Gp | FF | ||
| Chlamydia muridarum | M | F.B.T / FF / EAD / CLP | ||
| Citrobacter freundii | M / R / H | FF | ||
| Citrobacter rodentium BAC | M | F.B.T / FF / EAD / CLP | FF / TM Swab: Faecal | |
| Clostridium (renamed Clostridioides) difficile Toxin A/B | M / R / Rb / Gp / H / F | F.B.T / FF | ||
| Clostridium perfringens | M / Gp | FF / TM Swab: Faecal | ||
| Clostridium piliforme (TYZ) | M / R / Rb / Gp / H | Sera / DBS | F.B.T / FF / LIVER in B.T / EAD / CLP | |
| Clostridium spiroforme | Rb | FF / TM Swab: Faecal | ||
| Corynebacterium bovis BAC | M / R | FLOQ Swab: Pelt (in B.T) / EAD / CLP | TM Swab: Pelt | |
| Corynebacterium kutscheri BAC | M / R / Rb / H / F | F.B.T / FF / FLOQ Swab: Oral P (in B.T) / EAD / CLP | TM Swab: Oral P or Genital / FF / TM Swab: Faecal | |
| Cryptosporidium spp. M.T | M / R / Rb / Gp / H | F.B.T / FF / EAD | ||
| Demodex musculi | M / R / Rb / Gp / H | Hair Plucks / Skin Scrapings | ||
| Dermatophytes | M / R / Rb / Gp / H | FLOQ Swab: Pelt (in B.T) / EAD | Hair Plucks / Skin Scrapings | |
| Ectoparasites | M / R / Rb / Gp / H / F | Fur Tape Test / Skin Scrapings | ||
| Ectromelia Virus (ECT) | M | Sera / DBS | Pelt in B.T / SPLEEN in B.T / F.B.T / FF / EAD / CLP | |
| Edwardsiella ictaluri | Zf | Whole Zebrafish in B.T | ||
| Eimeria spp. | Rb / Gp / H | F.B.T / FF / EAD | FF | |
| Eimeria stiedae | Rb | F.B.T / FF / LIVER in B.T / EAD | FF | |
| Encephalitozoon cuniculi (ECUN) | M / R / Rb / Gp / H | Sera / DBS | KIDNEY in B.T / Urine-soaked F in B.T / F.B.T / FF / EAD | |
| Entamoeba caviae | Gp | FF | ||
| Entamoeba muris | M / R / Rb / Gp /H | F.B.T / FF / EAD | FF | |
| Enterobacter spp. | M / R / F | FF / TM Swab: Faecal | ||
| Enterococcus spp. | M / F | TM Swab: Oral P / FF / TM Swab: Faecal | ||
| Escherichia coli | M / R / Rb / Gp / H / F | F.B.T / FF / EAD / CLP | FF | |
| Fungal Culture | M / R / Rb / Gp / H / F | FF / TM Swab: Faecal | ||
| Fur mites - Myobia musculi | M / R | FLOQ Swab: Pelt (in B.T) / EAD | Fur Tape Test / Skin Scrapings | |
| Fur mites - Myocoptes musculinus | M / R | FLOQ Swab: Pelt (in B.T) / EAD | Fur Tape Test / Skin Scrapings | |
| Fur mites - Radfordia affinis | M / R | FLOQ Swab: Pelt (in B.T) / EAD | Fur Tape Test / Skin Scrapings | |
| Giardia muris | M / R / Rb / Gp | F.B.T / FF / EAD | FF | |
| GP Adenovirus (GPAdV) | Gp | Sera / DBS | ||
| GP Cytomegalovirus (GPCMV) | Gp | Sera / DBS | ||
| Hantaan Virus (HANT - RNA virus) | M / R | Sera / DBS | KIDNEY in B.T / F.B.T / EAD / CLP | |
| Helicobacter spp. | M / R / Gp / H / F | F.B.T / FF / EAD / CLP | ||
| Helicobacter bilis | M / R | F.B.T / FF / EAD / CLP | ||
| Helicobacter ganmani | M / R | F.B.T / FF / EAD / CLP | ||
| Helicobacter hepaticus | M / R | F.B.T / FF / EAD / CLP | ||
| Helicobacter mastomyrinus | M / R | F.B.T / FF / EAD / CLP | ||
| Helicobacter MIT 01-6451 | M / R | F.B.T / FF / EAD / CLP | ||
| Helicobacter rodentium | M / R / Gp | F.B.T / FF / EAD / CLP | ||
| Helicobacter typhlonius | M / R | F.B.T / FF / EAD / CLP | ||
| Helminths | M / R | FF | ||
| Hymenolepsis spp. (Tapeworm) | M / R | F.B.T / FF / EAD | ||
| Ichthyobodo spp. | Zf | Whole Zebrafish in B.T | ||
| Ichthyophthirius multifiliis | Zf | Whole Zebrafish in B.T | ||
| K Virus (K VIRUS) | M | Sera / DBS | F.B.T / FF / KIDNEY in B.T / EAD / CLP | |
| Kilham Rat Virus (KRV) | R | Sera / DBS | F.B.T / FF / MLN in B.T / EAD / CLP | |
| Klebsiella spp. | M / R / F | FF / TM Swab: Faecal | ||
| Klebsiella oxytoca BAC | M / R / H / F | F.B.T / FF / EAD / CLP | FF / TM Swab: Faecal | |
| Klebsiella pneumoniae BAC | M / R / Rb / Gp / H / F | F.B.T / FF / LUNG in B.T / EAD / CLP | FF / TM Swab: Faecal | |
| Lactate Dehydrogenase Elevating Virus (LDEV - RNA virus) | M | DBS in B.T / SPLEEN in B.T / EAD / CLP | ||
| Leptospira spp. | M / R / Rb / Gp / H | KIDNEY in B.T / F.B.T / FF / EAD / CLP | ||
| Listeria monocytogenes | M / R / Rb / F | TM Swab: Oral P or Genital / FF / TM Swab: Faecal | ||
| Lymphocytic Choriomeningitis Virus (LCMV - RNA virus) | M / R / Gp / H | Sera / DBS | KIDINEY in B.T / Urine-soaked F in B.T / F.B.T / EAD / CLP | |
| Minute Virus of Mice (MVM) | M | Sera / DBS | F.B.T / FF / MLN in B.T / EAD / CLP | |
| Mouse Hepatitis Virus (MHV - RNA virus) | M | Sera / DBS | F.B.T / MLN in B.T / EAD / CLP | |
| Mouse Kidney Parvovirus (MKPV) | M | Urine-soaked F in B.T / F.B.T / FF / KIDNEY in B.T / EAD / CLP | ||
| Mouse Norovirus (MNV - RNA virus) | M | Sera / DBS | F.B.T / MLN in B.T / EAD / CLP | |
| Mouse Parvovirus (MPV) | M | Sera / DBS | F.B.T / FF / MLN in B.T / EAD / CLP | |
| Mouse Thymic Virus (MTV) | M | Sera / DBS | FLOQ Swab: Oral P in B.T / SG in B.T / EAD / CLP | |
| Murine Astrovirus (MuAstV - RNA virus) | M | F.B.T / EAD / CLP | ||
| Murine Cytomegalovirus (MCMV) | M | Sera / DBS | FLOQ Swab: Oral P in B.T / SG in B.T / EAD / CLP | |
| Mycobacterium spp. | Zf | Whole Zebrafish in B.T | ||
| Mycobacterium chelonae | Zf | Whole Zebrafish in B.T | ||
| Mycobacterium fortuitum | Zf | Whole Zebrafish in B.T | ||
| Mycobacterium heamophilium | Zf | Whole Zebrafish in B.T | ||
| Mycobacterium marinum | Zf | Whole Zebrafish in B.T | ||
| Mycoplasma spp. | Cell Line | CLP / Cell Culture Supernatant | ||
| Mycoplasma pulmonis (PULM) | M / R / Rb / Gp / H | Sera / DBS | FLOQ Swab: Oral P (in B.T) / LUNG in B.T / EAD / CLP | |
| Myxidium streisingeri | Zf | Whole Zebrafish in B.T | ||
| Notoedres spp. | M | Fur Tape Test / Skin Scrapings | ||
| Parainfluenza Virus 3 (PIV-3 - RNA virus) | Gp | Sera / DBS | ||
| Parvovirus (PARV NS-1 / generic) | M / R | Sera / DBS | F.B.T / FF / MLN in B.T / EAD / CLP | |
| Pasteurella multocida BAC | Rb | FLOQ Swab: Oral P (in B.T) / EAD / CLP | TM Swab: Oral P | |
| Pasteurella pneumotropica BAC | M / R / H / F | FLOQ Swab: Oral P (in B.T) / EAD / CLP | TM Swab: Oral P | |
| Pasteurella pneumotropica Heyl (renamed Rodentibacter Heylii) BAC | M / R | FLOQ Swab: Oral P (in B.T) | TM Swab: Oral P | |
| Pasteurella pneumotropica Jawetz (renamed Rodentibacter pneumotropicus) BAC | M / R | FLOQ Swab: Oral P (in B.T) | TM Swab: Oral P | |
| Pasteurellaceae spp. BAC | M / R / Rb / Gp / H / F | FLOQ Swab: Oral P (in B.T) | TM Swab: Oral P | |
| Picornavirus-1 (ZfPV1 - RNA virus) | Zf | Whole Zebrafish in B.T | ||
| Pinworm - Aspiculuris spp. | M / R | FF | ||
| Pinworm - Aspiculuris tetraptera | M / R | F.B.T / FF / EAD | FF | |
| Pinworm - Passalurus ambiguus | Rb | F.B.T / FF / EAD | FF | |
| Pinworm - Syphacia spp. | M / R | FF | ||
| Pinworm - Syphacia muris | R / H | F.B.T / FF / EAD | FF | |
| Pinworm - Syphacia obvelata | M / H | F.B.T / FF / EAD | FF | |
| Piscinoodinium spp. | Zf | Whole Zebrafish in B.T | ||
| Pleistophora hyphessobryconis | Zf | Whole Zebrafish in B.T | ||
| Pneumocystis spp. | M / R / Rb / Gp / H | FLOQ Swab: Oral P (in B.T) / LUNG in B.T / EAD | ||
| Pneumocystis carinii (PCAR) | R | Sera / DBS | FLOQ Swab: Oral P (in B.T) / LUNG in B.T / EAD | |
| Pneumocystis murina (PMUR) | M | Sera / DBS | FLOQ Swab: Oral P (in B.T) / LUNG in B.T / EAD | |
| Pneumonia Virus of Mice (PVM - RNA virus) | M / R / Rb / Gp / H | Sera / DBS | LUNG in B.T / FLOQ Swab: Oral P (in B.T) / EAD / CLP | |
| Polyomavirus (POLY) | M | Sera / DBS | F.B.T / FF / EAD / CLP | |
| Polyplax serrata | M | Fur Tape Test / Skin Scrapings | ||
| Polyplax spinulosa | R | Fur Tape Test / Skin Scrapings | ||
| Proteus spp. | M / R / Rb / Gp / F | FF / TM Swab: Faecal | ||
| Proteus mirabilis | M / R | F.B.T / FF / EAD / CLP | FF / TM Swab: Faecal | |
| Protozoa | M / R / H / F | FF | ||
| Pseudocapillaria tomentosa | Zf | Whole Zebrafish in B.T | ||
| Pseudoloma neurophila | Zf | Whole Zebrafish in B.T | ||
| Pseudomonas spp. BAC | M / R / Rb / Gp / H | F.B.T / FF / EAD | FF / TM Swab: Faecal | |
| Pseudomonas aeruginosa BAC | M / R / H / Gp | F.B.T / FF / EAD / CLP | FF / TM Swab: Faecal | |
| Psorergates spp. | M | Fur Tape Test / Skin Scrapings | ||
| Rabbit Haemorrhagic Disease Virus (RHDV - RNA virus) | Rb | Sera / DBS | DBS in B.T / LIVER in B.T | |
| Rabbit Histology | Rb | |||
| Rabbit Rotavirus (RBROTA - RNA virus) | Rb | Sera / DBS | ||
| Radfordia spp. | M / R | Fur Tape Test / Skin Scrapings | ||
| Rat Coronavirus (RCV / SDAV - RNA virus) | R | Sera / DBS | F.B.T / MLN in B.T / EAD / CLP | |
| Rat Minute Virus (RMV) | R | Sera / DBS | F.B.T / FF / MLN in B.T / EAD / CLP | |
| Rat Parvovirus (RPV) | R | Sera / DBS | F.B.T / FF / MLN in B.T / EAD / CLP | |
| Rat Polyomavirus 2 (RPyV2) | R | F.B.T / FF / SG in B.T | ||
| Rat Theilovirus (RTV - RNA virus) | R | Sera / DBS | F.B.T / MLN in B.T / EAD / CLP | |
| Reovirus Type 3 (REO - RNA virus) | M / R / Rb / Gp / H | Sera / DBS | F.B.T / MLN in B.T / EAD / CLP | |
| Rodentolepis nana | M | FF | ||
| Rotavirus (EDIM / ROTA - RNA virus) | M | Sera / DBS | F.B.T / MLN in B.T / EAD / CLP | |
| Salmonella spp. | M / R / Rb / Gp / H | F.B.T / FF / EAD / CLP | FF / TM Swab: Faecal | |
| Segmented Filamentous Bacteria | M | F.B.T / FF / EAD / CLP | ||
| Sendai Virus (SEND - RNA virus) | M / R / Rb / Gp / H | Sera / DBS | LUNG in B.T / FLOQ Swab: Oral P (in B.T) / EAD / CLP | |
| Shigella and EIEC | M / R / Rb / Gp / H / F | F.B.T / FF / EAD / CLP | FF | |
| Simian Virus 5 (PI2) (SV5 - RNA virus) | M / Rb / Gp / H | Sera / DBS | ||
| Spironucleus muris | M / R | F.B.T / FF / EAD | FF | |
| Staphylococcus spp. | M / R / Rb / Gp / H | F.B.T / FF / EAD | TM Swab: Oral P / FF / TM Swab: Faecal | |
| Staphylococcus spp. (coag neg) | M / R / Gp / F | TM Swab: Oral P / FF / TM Swab: Faecal | ||
| Staphylococcus aureus BAC | M / R / Rb / Gp / H | FLOQ Swab: Oral P (in B.T) / F.B.T / FF / EAD / CLP | TM Swab: Oral P / FF / TM Swab: Faecal | |
| Staphylococcus xylosus BAC | M / R | FLOQ Swab: Pelt (in B.T) / EAD / CLP | TM Swab: Oral P / TM Swab: Pelt / FF / TM Swab: Faecal | |
| Streptobacillus moniliformis | M / R / Gp / H | FLOQ Swab: Oral P (in B.T) / SG in B.T / EAD / CLP | ||
| Streptococcus spp. | M / R / Rb / Gp / H | FLOQ Swab: Oral P (in B.T) / EAD | TM Swab: Oral P or Tracheal | |
| Streptococcus spp. (α-haem) | M / F | TM Swab: Oral P or Tracheal | ||
| Streptococcus spp. (β-haem) | M / R / Rb / Gp / H | TM Swab: Oral P or Tracheal | ||
| Streptococcus spp. (β-haem) - Group A | M / R / Rb / Gp / H | FLOQ Swab: Oral P (in B.T) / EAD / CLP | TM Swab: Oral P or Tracheal | |
| Streptococcus spp. (β-haem) - Group B | M / R / Rb / Gp / H | FLOQ Swab: Oral P (in B.T) / EAD / CLP | TM Swab: Oral P or Tracheal | |
| Streptococcus spp. (β-haem) - Group C | M / R / Rb / Gp / H | FLOQ Swab: Oral P (in B.T) / EAD / CLP | TM Swab: Oral P or Tracheal | |
| Streptococcus spp. (β-haem) - Group G | M / R / Rb / Gp / H | FLOQ Swab: Oral P (in B.T) / EAD / CLP | TM Swab: Oral P or Tracheal | |
| Streptococcus pneumoniae (α-haem) | M / R / Rb / Gp / H | FLOQ Swab: Oral P (in B.T) / EAD / CLP | TM Swab: Oral P or Tracheal / TM Swab: Lung | |
| Tapeworms (Cestodes) | M / R / Rb / Gp | FF | ||
| Tetratymena spp. | Zf | Whole Zebrafish in B.T | ||
| Theiler`s Encephalomyelitis virus (TMEV - RNA virus) | M | Sera / DBS | F.B.T / MLN in B.T / EAD / CLP | |
| Toolan`s H-1 (TH-1) | R | Sera / DBS | F.B.T / FF / MLN in B.T / EAD / CLP | |
| Toxoplasma gondii (TOXO) | Rb | Sera / DBS | ||
| Trichomonas caviae | Gp | FF | ||
| Tritrichomonas muris | M / R / Rb / Gp / H | F.B.T / FF / EAD | FF | |
| Yersinia spp. | M / R / Gp / H | FF / TM Swab: Faecal | ||
| Yersinia enterocolitica | M / R / Gp / H | F.B.T / FF / EAD / CLP | FF / TM Swab: Faecal | |
| Yersinia pseudotuberculosis | M / R / Gp / H | F.B.T / FF / EAD / CLP | FF / TM Swab: Faecal |